trait2gene.cli

Functions

doctor([config])	Inspect environment health and optional config wiring.
fetch_resources_cmd(config)	Resolve resources and write the manifest.
inspect_outputs(path)	Summarize a standardized output directory.
prep_features_cmd(config)	Prepare or validate feature bundles.
prioritize_cmd(config)	Produce locus-level prioritized genes.
report_cmd(config)	Render report assets from current outputs.
run(config)	Run the full pipeline.
run_magma_cmd(config)	Plan the MAGMA stage.
run_pops_cmd(config)	Plan the PoPS stage.
validate_cmd(config)	Validate config and input contracts.