Configuration

trait2gene uses TOML to avoid a runtime YAML dependency.

Required keys

• project

• trait

• [input]

• [output]

Required input fields

• input.sumstats

• input.genome_build

• input.ancestry

Execution modes

plan

Use this when you are still wiring paths. Only the input table is required.

run

Use this when you want the package to materialize a real run directory. In this mode, the config must also provide:

• resources.gene_annotation

• one of resources.magma_bin or resources.precomputed_magma_prefix

• one of resources.feature_prefix or resources.raw_feature_dir