Infer exploratory cell-cell communication
Usage
infer_communication(
obj,
lr_pairs = NULL,
min_detected = 0.1,
min_specificity = 0.15,
outdir = NULL
)
Arguments
- obj
A scdown_obj.
- lr_pairs
Optional ligand-receptor table.
- min_detected
Minimum detection rate for ligand and receptor.
- min_specificity
Minimum specificity score.
- outdir
Optional output directory.
Value
A list with communication tables and plot paths.