Find marker genes for each annotation
Usage
find_markers(
obj,
top_n = 10L,
exclude_pattern = "^(RPL|RPS|MT-|MALAT1$|MTRNR|HSP)",
min_pct_in = 0.1,
min_pct_diff = 0.05,
min_marker_score = 0.25,
outdir = NULL
)Arguments
- obj
A
scdown_obj.- top_n
Number of top marker genes per annotation.
- exclude_pattern
Pattern for low-information genes to exclude.
- min_pct_in
Minimum detection rate inside the target annotation.
- min_pct_diff
Minimum detection improvement over the rest.
- min_marker_score
Minimum expression improvement over the rest.
- outdir
Optional output directory.