Build a compact HTML report — build_scdown_report • scdown

Build a compact HTML report

Usage

build_scdown_report(
  obj,
  signatures = c("cytotoxic", "antigen_presentation"),
  panels = c("t_cell", "nk", "b_cell", "monocyte", "macrophage", "dendritic"),
  signature_sets = NULL,
  marker_panels = NULL,
  outdir = tempfile("scdown-report-")
)

Arguments

obj: A scdown_obj.
signatures: Character vector of built-in signature names or a named list of signatures.
panels: Character vector of built-in marker panel names or a named list of marker panels.
signature_sets: Optional named list of custom signatures.
marker_panels: Optional named list of custom marker panels.
outdir: Output directory.

Value

Path to the generated HTML report.