Convert expranno output to SummarizedExperiment — as_expranno

Creates a SummarizedExperiment with annotated expression values in the main assay, annotation fields in rowData, and sample metadata in colData. When available, signature and deconvolution outputs are also appended to colData as sample-level columns.

Usage

as_expranno_se(
  x,
  assay_name = "expression",
  include_signatures = TRUE,
  include_deconvolution = TRUE
)

Arguments

x: An expranno_result or expranno_annotation.
assay_name: Assay name used for the expression matrix.
include_signatures: Whether to append signature scores to colData when x is an expranno_result.
include_deconvolution: Whether to append deconvolution scores to colData when x is an expranno_result.

Value

A SummarizedExperiment.