Converts a SummarizedExperiment-like object into the strict expr and
meta data-frame contract used by expranno.
Usage
as_expranno_input(
x,
assay_name = NULL,
gene_id_col = NULL,
sample_col = "sample"
)
Arguments
- x
A SummarizedExperiment or SingleCellExperiment.
- assay_name
Optional assay name or index. Defaults to the first assay.
- gene_id_col
Optional row-data column containing Ensembl gene IDs.
- sample_col
Column name to use for sample identifiers in the output
metadata table.
Value
A named list with expr and meta.
